Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022166.1 Corchorus olitorius cultivar O-4 contig22199, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8319

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
161--193
15
2.2
16
89
10
52
72
0
12
15
1.12
250--289
11
3.5
11
80
12
53
62
10
7
20
1.50
238--289
24
2.2
24
100
0
104
59
11
7
21
1.56
238--279
13
3.4
13
80
12
61
57
11
9
21
1.63
629--1016
50
7.7
50
89
2
551
25
27
11
35
1.90
1433--1777
124
2.7
126
84
7
412
22
24
16
36
1.94
1575--1680
36
3.1
36
59
22
84
21
24
16
36
1.94
1362--1777
65
6.4
65
83
9
424
23
23
16
36
1.94
1543--1875
67
5.0
68
88
6
345
22
25
15
36
1.93
3674--3721
12
4.2
11
92
7
78
25
4
16
54
1.60
3677--3721
23
1.9
24
95
4
83
26
4
17
51
1.65

Tables:   1

The End!