Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022167.1 Corchorus olitorius cultivar O-4 contig22200, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16552

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2009--2034
11
2.4
11
100
0
52
7
15
7
69
1.35
2794--2835
15
2.7
15
92
3
66
11
9
14
64
1.50
3569--3619
26
2.0
26
88
7
77
35
11
7
45
1.70
3571--3620
13
3.8
13
79
12
57
38
10
8
44
1.68
4807--5074
41
6.6
41
86
3
346
37
19
27
15
1.92
4807--5066
121
2.1
123
88
2
382
37
20
26
15
1.92
5044--5412
49
7.5
49
86
3
426
42
21
21
14
1.88
6799--6834
19
1.9
18
88
5
54
33
22
2
41
1.68
6799--6845
11
4.7
10
80
17
53
31
21
6
40
1.78
7379--7436
29
2.0
30
89
3
91
32
20
8
37
1.83
7388--7424
19
2.0
18
89
5
56
35
21
2
40
1.68
7379--7435
11
5.6
10
82
16
64
31
21
8
38
1.84
7664--7768
48
2.2
49
85
1
149
41
20
24
12
1.87
6799--7963
590
2.0
590
97
0
2204
38
17
15
28
1.90
8563--8704
49
2.9
48
86
8
178
34
15
4
45
1.66
12715--12763
22
2.3
22
89
3
73
30
14
2
53
1.52
15718--15747
8
3.6
8
91
8
51
13
0
0
86
0.57
15718--15759
18
2.3
19
92
8
70
14
2
0
83
0.75

Tables:   1

The End!