Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022169.1 Corchorus olitorius cultivar O-4 contig22202, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6611
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.30


Found at i:2963 original size:16 final size:17

Alignment explanation


    Indices: 2934--2971  Score: 51
    Period size: 16  Copynumber: 2.3  Consensus size: 17

       2924 GAAAATAAAC

                             
       2934 AAAAATAAAAGAAAAAG
          1 AAAAATAAAAGAAAAAG

                     *      *
       2951 AAAAAT-AACGAAAAAT
          1 AAAAATAAAAGAAAAAG

                 
       2967 AAAAA
          1 AAAAA

       2972 GATAAGGGTA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  16   13  0.68
  17    6  0.32

ACGTcount: A:0.82, C:0.03, G:0.08, T:0.08


Consensus pattern (17 bp):   
AAAAATAAAAGAAAAAG

Found at i:3272 original size:26 final size:26

Alignment explanation


    Indices: 3224--3275  Score: 68
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       3214 AAAATAGACA

                              *       
       3224 AATTAAACTAGAAAAGAATAAAATAG
          1 AATTAAACTAGAAAAGAAGAAAATAG

                        * **          
       3250 AATTAAACTAGAGATTAAGAAAATAG
          1 AATTAAACTAGAAAAGAAGAAAATAG

       3276 TTTAAAAAAA


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.62, C:0.04, G:0.13, T:0.21


Consensus pattern (26 bp):   
AATTAAACTAGAAAAGAAGAAAATAG
Done.