Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022172.1 Corchorus olitorius cultivar O-4 contig22205, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5026
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28


Found at i:2532 original size:15 final size:16

Alignment explanation


    Indices: 2512--2551  Score: 64
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       2502 AGAGGTTGAA

                            
       2512 AGAAAACAATTAAAC-
          1 AGAAAACAATTAAACT

                        *   
       2527 AGAAAACAATTATACT
          1 AGAAAACAATTAAACT

                     
       2543 AGAAAACAA
          1 AGAAAACAA

       2552 AGCAAAGTAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  15   14  0.61
  16    9  0.39

ACGTcount: A:0.65, C:0.12, G:0.07, T:0.15


Consensus pattern (16 bp):   
AGAAAACAATTAAACT

Found at i:3938 original size:20 final size:21

Alignment explanation


    Indices: 3901--3943  Score: 70
    Period size: 20  Copynumber: 2.1  Consensus size: 21

       3891 CTCTTGAAAT

                  *              
       3901 AAATCTTCAAATTAAGTCTTC
          1 AAATCTCCAAATTAAGTCTTC

                                 
       3922 AAATCTCCAAA-TAAGTCTTC
          1 AAATCTCCAAATTAAGTCTTC

              
       3942 AA
          1 AA

       3944 TGAGTCTTCA


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  20   11  0.52
  21   10  0.48

ACGTcount: A:0.42, C:0.21, G:0.05, T:0.33


Consensus pattern (21 bp):   
AAATCTCCAAATTAAGTCTTC
Done.