Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022175.1 Corchorus olitorius cultivar O-4 contig22208, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9838
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32


Found at i:1375 original size:15 final size:16

Alignment explanation


    Indices: 1355--1403  Score: 55
    Period size: 19  Copynumber: 2.9  Consensus size: 16

       1345 AAGAAAATTA

                            
       1355 AAGAAAACAATTAA-C
          1 AAGAAAACAATTAATC

                         *     
       1370 AAGAAAACAGTGAATAATC
          1 AAGAAAACA---ATTAATC

                           
       1389 AAGAAAACAATTAAT
          1 AAGAAAACAATTAAT

       1404 AAAAACCTCC


Statistics
Matches: 28,  Mismatches: 2, Indels: 7
        0.76            0.05        0.19

Matches are distributed among these distances:
  15    9  0.32
  16    5  0.18
  18    4  0.14
  19   10  0.36

ACGTcount: A:0.63, C:0.10, G:0.10, T:0.16


Consensus pattern (16 bp):   
AAGAAAACAATTAATC

Found at i:1404 original size:19 final size:19

Alignment explanation


    Indices: 1369--1405  Score: 56
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       1359 AAACAATTAA

                      *        
       1369 CAAGAAAACAGTGAATAAT
          1 CAAGAAAACAATGAATAAT

                        *     
       1388 CAAGAAAACAATTAATAA
          1 CAAGAAAACAATGAATAA

       1406 AAACCTCCAA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   16  1.00

ACGTcount: A:0.62, C:0.11, G:0.11, T:0.16


Consensus pattern (19 bp):   
CAAGAAAACAATGAATAAT
Done.