Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022177.1 Corchorus olitorius cultivar O-4 contig22210, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11784
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29


Found at i:3550 original size:29 final size:29

Alignment explanation


    Indices: 3489--3552  Score: 85
    Period size: 29  Copynumber: 2.2  Consensus size: 29

       3479 CATCAATTCT

                                      * *
       3489 TCAAAATAAAATCTCTAGTCAACAATTCT
          1 TCAAAATAAAATCTCTAGTCAACAATACA

                                 *        
       3518 TCAAAATAAAATCTCTAGATCTAC-ATACA
          1 TCAAAATAAAATCTCTAG-TCAACAATACA

                  
       3547 TCAAAA
          1 TCAAAA

       3553 ACCTAAACCT


Statistics
Matches: 31,  Mismatches: 3, Indels: 2
        0.86            0.08        0.06

Matches are distributed among these distances:
  29   27  0.87
  30    4  0.13

ACGTcount: A:0.48, C:0.20, G:0.03, T:0.28


Consensus pattern (29 bp):   
TCAAAATAAAATCTCTAGTCAACAATACA
Done.