Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022180.1 Corchorus olitorius cultivar O-4 contig22213, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 758

Length: 1264
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31


Found at i:419 original size:24 final size:24

Alignment explanation


    Indices: 392--445  Score: 56
    Period size: 24  Copynumber: 2.2  Consensus size: 24

        382 GCCTGAAATT

                           *         
        392 TTCTTCCACAAGCTCTA-CACTGCA
          1 TTCTTCCACAA-CTCAATCACTGCA

                *  *             *  
        416 TTCTCCCTCAACTCAATCACTTCA
          1 TTCTTCCACAACTCAATCACTGCA

                  
        440 TTCTTC
          1 TTCTTC

        446 AGCATTTTTG


Statistics
Matches: 24,  Mismatches: 5, Indels: 2
        0.77            0.16        0.06

Matches are distributed among these distances:
  23    4  0.17
  24   20  0.83

ACGTcount: A:0.22, C:0.39, G:0.04, T:0.35


Consensus pattern (24 bp):   
TTCTTCCACAACTCAATCACTGCA
Done.