Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022185.1 Corchorus olitorius cultivar O-4 contig22218, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2970
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36


Found at i:957 original size:27 final size:27

Alignment explanation


    Indices: 922--978  Score: 78
    Period size: 27  Copynumber: 2.1  Consensus size: 27

        912 TGTCCCTCTG

                          *          * 
        922 AAAAAAAAAAAGAGTGTTAGTAACCTC
          1 AAAAAAAAAAAGAGAGTTAGTAACCCC

                *       *              
        949 AAAAGAAAAAAGGGAGTTAGTAACCCC
          1 AAAAAAAAAAAGAGAGTTAGTAACCCC

               
        976 AAA
          1 AAA

        979 TCATGAACAC


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  27   26  1.00

ACGTcount: A:0.56, C:0.12, G:0.18, T:0.14


Consensus pattern (27 bp):   
AAAAAAAAAAAGAGAGTTAGTAACCCC
Done.