Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022189.1 Corchorus olitorius cultivar O-4 contig22222, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22378

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5973--6031
31
1.9
31
100
0
118
28
23
11
35
1.91
9335--9394
16
3.8
16
93
0
102
28
51
1
18
1.55
11053--11086
13
2.6
14
86
13
54
52
17
0
29
1.45
12256--12348
46
2.0
46
91
4
152
40
18
4
36
1.70
15560--15603
21
2.2
20
87
4
61
6
9
38
45
1.63
20650--20696
6
8.0
6
84
13
62
80
17
2
0
0.80
20638--20696
10
5.5
11
80
15
54
83
15
1
0
0.74
20648--20688
17
2.4
16
92
8
64
85
12
2
0
0.70
21460--21584
44
2.8
44
82
0
142
40
14
12
32
1.84
21460--21605
22
6.5
22
71
6
96
39
13
15
31
1.87
21627--21684
22
2.6
23
81
13
68
41
3
22
32
1.71
21713--21956
22
11.1
22
74
10
149
31
11
17
39
1.85
21713--21932
44
5.0
44
70
10
164
31
11
17
39
1.85

Tables:   1

The End!