Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022191.1 Corchorus olitorius cultivar O-4 contig22224, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26078

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3204--3250
25
1.9
24
91
4
76
31
4
8
55
1.49
3420--3450
15
2.1
15
100
0
62
12
0
19
67
1.22
3638--3668
15
2.1
15
94
5
55
12
0
22
64
1.27
3323--3968
218
3.0
217
94
3
1100
35
10
9
45
1.71
17292--17316
12
2.1
12
100
0
50
40
20
16
24
1.91
19129--19169
21
1.9
22
85
5
57
43
7
14
34
1.73
22192--22285
41
2.3
41
88
3
136
47
15
12
23
1.80
23520--23587
31
2.2
31
86
5
93
39
8
13
38
1.75
23540--23598
31
1.9
31
92
0
100
38
10
15
35
1.81
25760--25819
27
2.2
27
87
0
93
45
21
15
18
1.86

Tables:   1

The End!