Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022192.1 Corchorus olitorius cultivar O-4 contig22225, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5292
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31


Found at i:913 original size:13 final size:13

Alignment explanation


    Indices: 895--922  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

        885 ACAAAAAGGA

                         
        895 AGGGAAAATTAGG
          1 AGGGAAAATTAGG

                         
        908 AGGGAAAATTAGG
          1 AGGGAAAATTAGG

              
        921 AG
          1 AG

        923 TGCTTAGTAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.46, C:0.00, G:0.39, T:0.14


Consensus pattern (13 bp):   
AGGGAAAATTAGG
Done.