Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022193.1 Corchorus olitorius cultivar O-4 contig22226, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39289

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--30
2
15.0
2
100
0
60
50
0
0
50
1.00
2278--2315
11
3.5
11
89
10
51
39
0
2
57
1.12
3190--3231
21
2.0
21
95
0
75
28
30
0
40
1.57
3292--3354
32
2.0
32
90
0
99
22
17
15
44
1.86
8196--8234
19
2.0
21
85
10
55
7
17
0
74
1.05
9092--9361
139
1.9
138
89
0
414
38
19
13
28
1.90
9055--9361
46
6.7
46
87
1
400
37
20
14
27
1.91
9316--9571
91
2.8
91
87
5
367
33
23
14
27
1.94
9601--10319
54
13.9
54
78
9
494
32
21
16
29
1.95
9658--9745
43
2.0
43
84
0
113
29
23
18
28
1.98
9766--10058
152
1.9
151
86
0
415
31
22
16
30
1.96
9600--10113
206
2.5
205
85
0
677
31
22
16
28
1.96
9978--10364
51
7.5
50
83
6
366
32
20
16
30
1.95
10086--10364
102
2.7
101
92
0
450
32
18
16
32
1.93
9718--10291
260
2.2
254
80
7
602
32
21
16
29
1.95
11462--11487
13
2.0
13
100
0
52
38
23
0
38
1.55
11888--11925
20
2.0
20
84
5
51
39
7
0
52
1.31
12696--12733
19
2.0
20
94
5
69
2
18
0
78
0.86
12701--12738
10
3.9
10
79
6
51
2
13
0
84
0.73
15364--15688
65
5.0
63
78
8
246
43
13
19
24
1.87
15249--15688
66
6.7
64
75
8
300
41
14
20
23
1.89
15515--15688
60
2.8
60
84
6
197
43
13
20
23
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22472--22500
9
3.3
9
95
4
51
17
13
20
48
1.81
22720--22766
26
1.9
24
87
12
69
27
27
4
40
1.75
23711--23739
15
1.9
15
100
0
58
51
27
6
13
1.66
26232--26323
21
4.4
21
90
2
141
28
17
26
28
1.98
34857--34895
16
2.4
16
91
0
60
71
12
2
12
1.24
35644--35669
11
2.4
11
100
0
52
69
7
15
7
1.35

Tables:   1

The End!