Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01022197.1 Corchorus olitorius cultivar O-4 contig22230, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25009
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.31
Found at i:592 original size:42 final size:42
Alignment explanation
Indices: 511--595 Score: 111
Period size: 41 Copynumber: 2.0 Consensus size: 42
501 TCATGAGAAA
*
511 TAAAAAGGGTGAATTAAAAAGAGAAGTGAAAATTAGTTTTTT
1 TAAAAAGGGTGAATTAAAAAGAGAAATGAAAATTAGTTTTTT
* *
553 TAAAAAGGG-GAATTAAAAAG-GAAAATGTAAATATGGTTTTTT
1 TAAAAAGGGTGAATTAAAAAGAG-AAATGAAAAT-TAGTTTTTT
595 T
1 T
596 TTTCTAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
40 1 0.03
41 19 0.50
42 18 0.47
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (42 bp):
TAAAAAGGGTGAATTAAAAAGAGAAATGAAAATTAGTTTTTT
Found at i:1787 original size:63 final size:63
Alignment explanation
Indices: 1688--1936 Score: 498
Period size: 63 Copynumber: 4.0 Consensus size: 63
1678 TGTTGAACAT
1688 TTCAAAATGTTTCAACAATTGTTACGACATTAAATCTCATTTGTCAGTTAATTCCAACAATTG
1 TTCAAAATGTTTCAACAATTGTTACGACATTAAATCTCATTTGTCAGTTAATTCCAACAATTG
1751 TTCAAAATGTTTCAACAATTGTTACGACATTAAATCTCATTTGTCAGTTAATTCCAACAATTG
1 TTCAAAATGTTTCAACAATTGTTACGACATTAAATCTCATTTGTCAGTTAATTCCAACAATTG
1814 TTCAAAATGTTTCAACAATTGTTACGACATTAAATCTCATTTGTCAGTTAATTCCAACAATTG
1 TTCAAAATGTTTCAACAATTGTTACGACATTAAATCTCATTTGTCAGTTAATTCCAACAATTG
1877 TTCAAAATGTTTCAACAATTGTTACGACATTAAATCTCATTTGTCAGTTAATTCCAACAA
1 TTCAAAATGTTTCAACAATTGTTACGACATTAAATCTCATTTGTCAGTTAATTCCAACAA
1937 ATATGTTCCA
Statistics
Matches: 186, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 186 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (63 bp):
TTCAAAATGTTTCAACAATTGTTACGACATTAAATCTCATTTGTCAGTTAATTCCAACAATTG
Found at i:5954 original size:40 final size:40
Alignment explanation
Indices: 5921--6012 Score: 166
Period size: 40 Copynumber: 2.3 Consensus size: 40
5911 CCTTCCGACC
5921 GGGAAGGGCAAAACAGGAATGAAATCAACACCTTCCGGTG
1 GGGAAGGGCAAAACAGGAATGAAATCAACACCTTCCGGTG
* *
5961 GGGAAGGGCATAACGGGAATGAAATCAACACCTTCCGGTG
1 GGGAAGGGCAAAACAGGAATGAAATCAACACCTTCCGGTG
6001 GGGAAGGGCAAA
1 GGGAAGGGCAAA
6013 CTGGAAAGAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.36, C:0.18, G:0.34, T:0.12
Consensus pattern (40 bp):
GGGAAGGGCAAAACAGGAATGAAATCAACACCTTCCGGTG
Found at i:6085 original size:40 final size:40
Alignment explanation
Indices: 6028--6591 Score: 873
Period size: 40 Copynumber: 14.1 Consensus size: 40
6018 AAGAATGGGC
*
6028 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGAAA
1 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
* * *
6068 TCTAAACAACACCTTCCGGTGAGGAAGGACAAACTGGTGAA
1 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGG-GAA
* * * *
6109 CTTAAACAATACCTTCCGATGAGGAA-GACAAACGGGGAA
1 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
* *
6148 TGCT-GACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
1 T-TTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
* *
6188 TTTAAAACAACCCCTTCCGATGAGGAA-GGCAAACTTGGAA
1 TTT-AAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
6228 TTTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
1 -TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
* * *
6269 TTTAAACAACACCTTCCGATGAGGAAAGCCGAACTGGGAA
1 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
* *
6309 TTTAAACAACACCTTCCGATGACGAAGGGCAAACTGGGAG
1 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
6349 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTTGGGAA
1 TTTAAACAACACCTTCCGATGAGGAAGGGCAAAC-TGGGAA
*
6390 TTTAAACAACACCTTCCGATGAGGAAGGGCAAATTGGGAA
1 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
6430 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
1 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
*
6470 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAG
1 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
*
6510 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTCGGAA
1 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
*
6550 TTTAAACAACACCTTTCGATGAGGAAGGGCAAACTGGGAA
1 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
6590 TT
1 TT
6592 ATCGAAGGAA
Statistics
Matches: 478, Mismatches: 38, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
39 24 0.05
40 357 0.75
41 97 0.20
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (40 bp):
TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAA
Found at i:6257 original size:201 final size:200
Alignment explanation
Indices: 5903--6591 Score: 883
Period size: 201 Copynumber: 3.4 Consensus size: 200
5893 AAAACATTGA
* * * * * *
5903 AAACAATACCTTCCGACCG-GGAAGGGCAAAAC-AGGAA-TGAAATCAACACCTTCCGGTGGGGA
1 AAACAACACCTTCCGA-TGAGGAAGGGC-AAACTGGGAATTTAAA-CAACACCTTCCGATGAGGA
* * * *
5965 AGGGCATAAC-GGGAA-TGAAATCAACACCTTCCGGTGGGGAAGGGCAAACTGGAAAGAATGGGC
63 AGGGCA-AACTGGGAATTTAAA-CAACACCTTCCGATGAGGAAGGGCAAATTGG---GAA-----
* * *
6028 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGAAATCTAAACAACACCTTCCGGTGAGGA
118 TTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAATTTAAACAACACCTTCCGATGAGGA
*
6093 AGGACAAACTGGTGAACTT
183 AGGACAAACTGG-GAATTT
* * * * *
6112 AAACAATACCTTCCGATGAGGAA-GACAAACGGGGAATGCT-GACAACACCTTCCGATGAGGAAG
1 AAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAAT-TTAAACAACACCTTCCGATGAGGAAG
*
6175 GGCAAACTGGGAATTTAAAACAACCCCTTCCGATGAGGAA-GGCAAACTT-GGAATTTTAAACAA
65 GGCAAACTGGGAATTT-AAACAACACCTTCCGATGAGGAAGGGCAAA-TTGGGAA-TTTAAACAA
* * *
6238 CACCTTCCGATGAGGAAGGGCAAACTGGGAATTTAAACAACACCTTCCGATGAGGAAAGCCGAAC
127 CACCTTCCGATGAGGAAGGGCAAACTGGGAATTTAAACAACACCTTCCGATGAGGAAGGACAAAC
6303 TGGGAATTT
192 TGGGAATTT
* *
6312 AAACAACACCTTCCGATGACGAAGGGCAAACTGGGAGTTTAAACAACACCTTCCGATGAGGAAGG
1 AAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAATTTAAACAACACCTTCCGATGAGGAAGG
6377 GCAAACTTGGGAATTTAAACAACACCTTCCGATGAGGAAGGGCAAATTGGGAATTTAAACAACAC
66 GCAAAC-TGGGAATTTAAACAACACCTTCCGATGAGGAAGGGCAAATTGGGAATTTAAACAACAC
*
6442 CTTCCGATGAGGAAGGGCAAACTGGGAATTTAAACAACACCTTCCGATGAGGAAGGGCAAACTGG
130 CTTCCGATGAGGAAGGGCAAACTGGGAATTTAAACAACACCTTCCGATGAGGAAGGACAAACTGG
*
6507 GAGTTT
195 GAATTT
* *
6513 AAACAACACCTTCCGATGAGGAAGGGCAAACTCGGAATTTAAACAACACCTTTCGATGAGGAAGG
1 AAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAATTTAAACAACACCTTCCGATGAGGAAGG
6578 GCAAACTGGGAATT
66 GCAAACTGGGAATT
6592 ATCGAAGGAA
Statistics
Matches: 430, Mismatches: 37, Indels: 35
0.86 0.07 0.07
Matches are distributed among these distances:
200 35 0.08
201 281 0.65
202 19 0.04
205 3 0.01
207 7 0.02
208 42 0.10
209 40 0.09
210 3 0.01
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (200 bp):
AAACAACACCTTCCGATGAGGAAGGGCAAACTGGGAATTTAAACAACACCTTCCGATGAGGAAGG
GCAAACTGGGAATTTAAACAACACCTTCCGATGAGGAAGGGCAAATTGGGAATTTAAACAACACC
TTCCGATGAGGAAGGGCAAACTGGGAATTTAAACAACACCTTCCGATGAGGAAGGACAAACTGGG
AATTT
Found at i:6668 original size:43 final size:43
Alignment explanation
Indices: 6599--7316 Score: 886
Period size: 42 Copynumber: 16.9 Consensus size: 43
6589 ATTATCGAAG
* * *
6599 GAAAACTA-GACCTTCCGACCGGGAAGGGGCATTTTTGGAAAT
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
*
6641 GAAGACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
* * * * *
6684 GAAAATAGGGACCTTTCAAACAGGAAGGGGCATTTTT-GAAAA
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
* * * *
6726 GACAACAAGGACCTTCCGACCGGGAAGGGGCATTTTT-GAAAA
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
* * * * *
6768 GACAATAAAGACCTTCCAACCAGGAAGGGACATTTTTTAGAAGA-
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCA-TTTTTGGAA-AT
* * *
6812 GAATA-AA-GACCTTCCAACTAGGAAGGGGCA-TTTTGGAAAA
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
6852 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTTGGAAAT
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCA-TTTTTGGAAAT
* **
6896 GAAAACAGGGACCTTCCAACTGGGAAGGGGCATTTTTGGAAAT
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
* *
6939 GAAAACAGGGACCTTCCAACCAGGAAGGGGCA-TTCTGGAAAT
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
* * * *
6981 GAAAACAAGGACCTTCCAACCAGGAAAGTGCATTTTTGCAAAA
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
*
7024 GAAAACAAGGACCTTCCAACCAGGAAAGGGCATTTTTGGAAAT
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
* * ** *
7067 GAAAACATGGACCTTCAAACCAAAAAGGGGCA-TTTTGGAGAT
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
7109 GAAAACAAGGACCTTCCAACCAGGAAGGGGCA-TTTTGGAAAT
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
* * * * **
7151 GAAAACAGGGACATTCCGACCGGGAAGGGGCATTTTTGTTAAT
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
*
7194 GAAAACAGGGACCTTCCAACCAGGAAGGGGCA-TTTTGGAAAT
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
* *
7236 GAAAGCAGGGACCTTCCAACCAGGAAGGGGCA-TTTTGGAAAT
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
* *
7278 GAAAACAAGGACCTTCCGACC-GGTAATGGGCATTTTTGG
1 GAAAACAAGGACCTTCCAACCAGG-AAGGGGCATTTTTGG
7317 TACAAAAGAA
Statistics
Matches: 591, Mismatches: 72, Indels: 25
0.86 0.10 0.04
Matches are distributed among these distances:
39 1 0.00
40 11 0.02
41 4 0.01
42 301 0.51
43 229 0.39
44 44 0.07
45 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.19
Consensus pattern (43 bp):
GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAAT
Found at i:7316 original size:85 final size:86
Alignment explanation
Indices: 6599--7316 Score: 886
Period size: 85 Copynumber: 8.5 Consensus size: 86
6589 ATTATCGAAG
* * * *
6599 GAAAACTA-GACCTTCCGACCGGGAAGGGGCATTTTTGGAAATGAAGACAAGGACCTTCCAACCA
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAATGAAAACAAGGACCTTCCAACCA
6663 GGAAGGGGCATTTTTGGAAAT
66 GGAAGGGGCATTTTTGGAAAT
* * * * * * * *
6684 GAAAATAGGGACCTTTCAAACAGGAAGGGGCATTTTT-GAAAAGACAACAAGGACCTTCCGACCG
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAATGAAAACAAGGACCTTCCAACCA
*
6748 GGAAGGGGCATTTTT-GAAAA
66 GGAAGGGGCATTTTTGGAAAT
* * * * * *
6768 GACAATAAAGACCTTCCAACCAGGAAGGGACATTTTTTAGAAGA-GAATA-AA-GACCTTCCAAC
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCA-TTTTTGGAA-ATGAAAACAAGGACCTTCCAAC
* *
6830 TAGGAAGGGGCA-TTTTGGAAAA
64 CAGGAAGGGGCATTTTTGGAAAT
* *
6852 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTTGGAAATGAAAACAGGGACCTTCCAACT
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCA-TTTTTGGAAATGAAAACAAGGACCTTCCAACC
*
6917 GGGAAGGGGCATTTTTGGAAAT
65 AGGAAGGGGCATTTTTGGAAAT
* *
6939 GAAAACAGGGACCTTCCAACCAGGAAGGGGCA-TTCTGGAAATGAAAACAAGGACCTTCCAACCA
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAATGAAAACAAGGACCTTCCAACCA
* * * *
7003 GGAAAGTGCATTTTTGCAAAA
66 GGAAGGGGCATTTTTGGAAAT
* * *
7024 GAAAACAAGGACCTTCCAACCAGGAAAGGGCATTTTTGGAAATGAAAACATGGACCTTCAAACCA
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAATGAAAACAAGGACCTTCCAACCA
** *
7089 AAAAGGGGCA-TTTTGGAGAT
66 GGAAGGGGCATTTTTGGAAAT
* * * *
7109 GAAAACAAGGACCTTCCAACCAGGAAGGGGCA-TTTTGGAAATGAAAACAGGGACATTCCGACCG
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAATGAAAACAAGGACCTTCCAACCA
**
7173 GGAAGGGGCATTTTTGTTAAT
66 GGAAGGGGCATTTTTGGAAAT
* * *
7194 GAAAACAGGGACCTTCCAACCAGGAAGGGGCA-TTTTGGAAATGAAAGCAGGGACCTTCCAACCA
1 GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAATGAAAACAAGGACCTTCCAACCA
7258 GGAAGGGGCA-TTTTGGAAAT
66 GGAAGGGGCATTTTTGGAAAT
* *
7278 GAAAACAAGGACCTTCCGACC-GGTAATGGGCATTTTTGG
1 GAAAACAAGGACCTTCCAACCAGG-AAGGGGCATTTTTGG
7317 TACAAAAGAA
Statistics
Matches: 545, Mismatches: 75, Indels: 26
0.84 0.12 0.04
Matches are distributed among these distances:
83 7 0.01
84 165 0.30
85 245 0.45
86 87 0.16
87 41 0.08
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.19
Consensus pattern (86 bp):
GAAAACAAGGACCTTCCAACCAGGAAGGGGCATTTTTGGAAATGAAAACAAGGACCTTCCAACCA
GGAAGGGGCATTTTTGGAAAT
Found at i:10680 original size:39 final size:39
Alignment explanation
Indices: 10637--10711 Score: 141
Period size: 39 Copynumber: 1.9 Consensus size: 39
10627 TGGCAATGAT
10637 CCGCTACAGCTAATCCAAAATAACAGAAAGAGGACAACA
1 CCGCTACAGCTAATCCAAAATAACAGAAAGAGGACAACA
*
10676 CCGCTACAGCTAATCTAAAATAACAGAAAGAGGACA
1 CCGCTACAGCTAATCCAAAATAACAGAAAGAGGACA
10712 GCACAACAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.48, C:0.24, G:0.16, T:0.12
Consensus pattern (39 bp):
CCGCTACAGCTAATCCAAAATAACAGAAAGAGGACAACA
Found at i:15500 original size:22 final size:21
Alignment explanation
Indices: 15457--15500 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
15447 AGCCTTAACA
15457 GAAAGGGGAGAGAAAATCAGAT
1 GAAAGGGGAGAGAAAA-CAGAT
15479 GAAAGGGATGAGAGAAAA-AGAT
1 GAAAGGG--GAGAGAAAACAGAT
15501 TCTTTTCAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 11 0.55
24 9 0.45
ACGTcount: A:0.52, C:0.02, G:0.36, T:0.09
Consensus pattern (21 bp):
GAAAGGGGAGAGAAAACAGAT
Found at i:20018 original size:31 final size:30
Alignment explanation
Indices: 19947--20031 Score: 104
Period size: 31 Copynumber: 2.9 Consensus size: 30
19937 TGGGACTTAG
*
19947 TAATTAATTATTGGTTTATTATTCA-CATAA
1 TAATTAATTATTGGTTTATTA-TCATTATAA
*
19977 -AA-GAATTATTGGTTTATTATCATTAGTAA
1 TAATTAATTATTGGTTTATTATCATTA-TAA
*
20006 TAATTAATTATTGGTGTATTATCATT
1 TAATTAATTATTGGTTTATTATCATT
20032 TGATTAGTAT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
27 3 0.06
28 17 0.36
29 5 0.11
30 2 0.04
31 20 0.43
ACGTcount: A:0.35, C:0.05, G:0.11, T:0.49
Consensus pattern (30 bp):
TAATTAATTATTGGTTTATTATCATTATAA
Found at i:23470 original size:32 final size:32
Alignment explanation
Indices: 23434--23498 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
23424 CGATTCTATT
*
23434 AATTTAACAATTACAATGAAGATTAAAAAATG
1 AATTTAACAATTACAATCAAGATTAAAAAATG
* * **
23466 AATTTGATAATTGTAATCAAGATTAAAAAATG
1 AATTTAACAATTACAATCAAGATTAAAAAATG
23498 A
1 A
23499 CCGCAGCGTA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.54, C:0.05, G:0.11, T:0.31
Consensus pattern (32 bp):
AATTTAACAATTACAATCAAGATTAAAAAATG
Found at i:23625 original size:41 final size:42
Alignment explanation
Indices: 23555--23636 Score: 132
Period size: 41 Copynumber: 2.0 Consensus size: 42
23545 AATAATTAAT
23555 ATTAGCTTTATTTTGATGAATTATCTAGAGATGGAGTAGAAA
1 ATTAGCTTTATTTTGATGAATTATCTAGAGATGGAGTAGAAA
*
23597 ATTAGCTTTA-TTTGATGAATT-GCTTAGAGATGGAGTAGAA
1 ATTAGCTTTATTTTGATGAATTATC-TAGAGATGGAGTAGAA
23637 TTTAGGTAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
40 1 0.03
41 27 0.71
42 10 0.26
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.38
Consensus pattern (42 bp):
ATTAGCTTTATTTTGATGAATTATCTAGAGATGGAGTAGAAA
Done.