Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022199.1 Corchorus olitorius cultivar O-4 contig22232, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9778

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
559--633
27
2.8
27
97
0
141
45
25
13
16
1.83
911--1680
50
15.4
50
94
0
1261
27
12
28
32
1.93
1764--2038
87
3.4
79
85
8
379
37
14
19
29
1.91
2425--2575
50
3.0
50
87
4
223
36
13
16
33
1.88
3184--3248
5
12.6
5
80
19
64
16
1
16
64
1.37
3183--3252
23
3.1
21
86
11
95
15
1
15
67
1.31
3212--3251
13
3.3
13
73
20
50
15
2
15
67
1.34
3189--3243
18
3.1
18
87
12
78
16
1
16
65
1.36
3260--3293
7
4.9
7
86
13
52
2
0
11
85
0.71
3261--3296
13
2.7
14
91
8
58
2
0
11
86
0.68

Tables:   1

The End!