Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000222.1 Corchorus olitorius cultivar O-4 contig00222, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 647

Length: 1079
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34


Found at i:569 original size:23 final size:23

Alignment explanation


    Indices: 539--590  Score: 104
    Period size: 23  Copynumber: 2.3  Consensus size: 23

        529 CTGGCCGTGG

                                   
        539 ACGTAAGTCACCTTCACCAAATC
          1 ACGTAAGTCACCTTCACCAAATC

                                   
        562 ACGTAAGTCACCTTCACCAAATC
          1 ACGTAAGTCACCTTCACCAAATC

                  
        585 ACGTAA
          1 ACGTAA

        591 ATCTCCTGTG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   29  1.00

ACGTcount: A:0.37, C:0.33, G:0.10, T:0.21


Consensus pattern (23 bp):   
ACGTAAGTCACCTTCACCAAATC
Done.