Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022202.1 Corchorus olitorius cultivar O-4 contig22235, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28605

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1887--1922
19
1.9
18
88
5
54
27
22
8
41
1.82
2029--2064
19
1.9
18
88
5
54
27
22
8
41
1.82
1847--2131
142
2.0
142
97
0
543
31
20
8
39
1.83
2875--3027
49
3.1
49
91
2
243
37
7
10
43
1.68
7227--7287
4
15.2
4
100
0
122
26
24
0
49
1.51
8668--8702
17
2.1
17
88
0
52
22
0
48
28
1.51
12877--12915
20
2.0
20
85
10
53
51
10
15
23
1.73
18472--18516
20
2.3
20
92
3
74
35
20
13
31
1.91
18765--18795
15
2.1
15
100
0
62
32
12
6
48
1.67
19272--19325
23
2.4
23
93
3
92
59
12
0
27
1.34
20733--20791
28
2.3
26
82
11
68
47
1
15
35
1.55
21017--21154
72
1.9
72
85
4
190
39
6
6
47
1.55
23084--23186
51
2.0
50
81
5
118
20
21
13
44
1.85
25075--25249
32
5.5
32
89
1
253
26
20
19
33
1.96
25945--26061
33
3.5
33
82
6
139
13
30
13
41
1.83
25945--26077
33
4.0
33
82
1
124
13
30
14
42
1.84
27125--27160
15
2.4
15
95
0
63
27
30
5
36
1.80
27892--27988
32
3.0
33
81
11
121
30
19
17
31
1.95

Tables:   1

The End!