Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022204.1 Corchorus olitorius cultivar O-4 contig22237, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14296
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31


Found at i:8902 original size:28 final size:28

Alignment explanation


    Indices: 8871--8929  Score: 66
    Period size: 29  Copynumber: 2.1  Consensus size: 28

       8861 AAAACAACAA

                     *       *           
       8871 TTAAAAACGTAAA-AATCATAATTTTTTT
          1 TTAAAAACGCAAAGAA-AATAATTTTTTT

                 *                       
       8899 TTAAAGACGCAAAGGAAAATAATTTTTTT
          1 TTAAAAACGCAAA-GAAAATAATTTTTTT

              
       8928 TT
          1 TT

       8930 TCTGAAAAAA


Statistics
Matches: 26,  Mismatches: 3, Indels: 3
        0.81            0.09        0.09

Matches are distributed among these distances:
  28   11  0.42
  29   13  0.50
  30    2  0.08

ACGTcount: A:0.44, C:0.07, G:0.08, T:0.41


Consensus pattern (28 bp):   
TTAAAAACGCAAAGAAAATAATTTTTTT
Done.