Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022207.1 Corchorus olitorius cultivar O-4 contig22240, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1836
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27


Found at i:305 original size:11 final size:11

Alignment explanation


    Indices: 289--314  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

        279 GGGGGGAAAA

                       
        289 AAAATTAGGGT
          1 AAAATTAGGGT

                       
        300 AAAATTAGGGT
          1 AAAATTAGGGT

                
        311 AAAA
          1 AAAA

        315 AAATATTATG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.54, C:0.00, G:0.23, T:0.23


Consensus pattern (11 bp):   
AAAATTAGGGT
Done.