Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022208.1 Corchorus olitorius cultivar O-4 contig22241, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18274

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1262--1321
30
2.0
30
83
6
77
41
5
18
35
1.72
2552--2621
37
1.9
35
83
11
88
20
11
7
61
1.53
3413--3522
22
5.0
22
80
2
123
55
2
25
16
1.54
3413--3522
44
2.5
44
82
2
141
55
2
25
16
1.54
3522--3742
54
4.1
54
88
1
336
46
6
19
28
1.74
3717--4680
483
2.0
481
95
1
1716
33
18
20
27
1.96
6343--6391
21
2.3
21
79
6
64
53
26
8
12
1.66
11000--11071
34
2.1
34
100
0
144
31
8
12
47
1.71
12087--12204
60
2.0
60
87
0
173
19
12
22
44
1.84
13818--13997
89
2.0
89
93
0
306
31
16
16
36
1.90
16733--16832
31
3.3
31
80
5
116
37
15
27
21
1.92
16748--16832
29
2.8
31
83
5
111
36
16
28
18
1.93

Tables:   1

The End!