Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022209.1 Corchorus olitorius cultivar O-4 contig22242, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41306

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
780--839
29
2.0
30
87
6
86
35
8
18
38
1.81
2204--2243
15
2.6
16
88
4
55
15
10
12
62
1.54
7131--7346
109
2.0
109
88
0
324
28
19
19
32
1.96
9916--9940
5
5.0
5
100
0
50
60
20
20
0
1.37
21660--21721
24
2.6
24
100
0
124
27
12
32
27
1.93
21944--21991
21
2.3
21
88
0
69
18
25
18
37
1.94
22020--22068
21
2.3
22
85
7
73
32
4
28
34
1.76
25425--25537
42
2.7
42
91
0
181
44
9
24
21
1.82
25649--25745
41
2.4
41
92
0
167
38
19
13
28
1.90
39831--39877
24
1.9
25
91
4
78
17
0
19
63
1.30
40023--40145
45
2.7
45
96
0
228
39
21
5
33
1.77
41126--41160
17
2.0
18
94
5
63
22
0
22
54
1.45

Tables:   1

The End!