Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022211.1 Corchorus olitorius cultivar O-4 contig22244, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57609

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--122
33
3.7
33
98
0
235
18
40
33
8
1.80
200--255
29
2.0
28
92
3
94
28
10
21
39
1.87
4433--4459
13
2.1
13
100
0
54
22
22
22
33
1.97
7317--8263
438
2.2
440
91
1
1544
25
12
18
43
1.86
9037--9076
20
2.0
20
100
0
80
25
25
10
40
1.86
9233--9282
21
2.4
21
93
6
84
28
16
26
30
1.96
9476--9600
65
1.9
65
96
0
232
21
27
29
21
1.99
18469--18524
28
2.0
29
85
3
78
30
10
21
37
1.87
19414--19501
45
2.0
43
89
6
133
42
22
4
30
1.74
20509--20567
20
2.8
21
73
21
61
59
6
0
33
1.24
21607--21631
13
1.9
13
100
0
50
56
0
0
44
0.99
22335--22380
22
2.1
22
87
0
65
45
8
10
34
1.70
22445--22522
22
3.5
22
70
6
68
33
7
14
44
1.73
23751--23838
45
2.0
44
93
2
149
39
19
5
35
1.75
26027--26065
2
19.0
2
94
5
69
48
0
2
48
1.15
26850--26883
18
2.0
17
88
11
52
29
5
20
44
1.75
28537--28570
5
7.2
5
93
6
54
58
0
0
41
0.98
29016--29048
2
17.0
2
87
6
50
45
0
0
54
0.99
38025--38060
14
2.6
15
87
12
51
66
0
0
33
0.92
39779--39852
32
2.3
32
81
2
87
37
20
6
35
1.79
49585--49673
21
4.2
21
91
0
133
40
22
13
23
1.89
49585--49673
42
2.1
42
93
0
151
40
22
13
23
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52657--52683
2
13.5
2
100
0
54
48
0
0
51
1.00
53372--53472
51
2.0
50
98
1
193
40
11
11
35
1.79
56523--56568
18
2.6
18
78
0
56
45
0
2
52
1.13

Tables:   1

The End!