Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022212.1 Corchorus olitorius cultivar O-4 contig22245, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5077
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24


Found at i:322 original size:51 final size:50

Alignment explanation


    Indices: 222--322  Score: 125
    Period size: 51  Copynumber: 2.0  Consensus size: 50

        212 TTCTTCATTA

                                                    * **      
        222 TTTCCTTGTTTAGATCTTGTCTCCGGACAAACAAACACTCTTTTAGTGTT
          1 TTTCCTTGTTTAGATCTTGTCTCCGGACAAACAAACACTCGTACAGTGTT

                                           *                     
        272 TTTCTCTTGTTTCA-ATCTTGTCTCCGGACATACAAACACT-GTACACGTGTT
          1 TTTC-CTTGTTT-AGATCTTGTCTCCGGACAAACAAACACTCGTACA-GTGTT

        323 CTTCATTCAG


Statistics
Matches: 44,  Mismatches: 4, Indels: 5
        0.83            0.08        0.09

Matches are distributed among these distances:
  50    6  0.14
  51   37  0.84
  52    1  0.02

ACGTcount: A:0.22, C:0.24, G:0.14, T:0.41


Consensus pattern (50 bp):   
TTTCCTTGTTTAGATCTTGTCTCCGGACAAACAAACACTCGTACAGTGTT
Done.