Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022218.1 Corchorus olitorius cultivar O-4 contig22251, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39589

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7092--7158
31
2.2
31
91
0
116
37
26
11
23
1.90
9145--9202
30
1.9
30
92
0
98
32
17
24
25
1.96
21940--22228
35
8.3
35
85
3
384
34
11
22
32
1.89
22000--22057
19
3.2
19
66
14
59
37
6
20
34
1.80
25498--25578
40
2.1
39
88
2
117
37
0
13
49
1.42
25548--25591
15
2.9
15
82
0
52
36
0
6
56
1.26
26207--26246
16
2.6
16
88
11
57
37
37
17
7
1.78
27812--27941
49
2.6
48
84
9
156
26
21
6
44
1.77
28326--28366
21
2.0
21
85
9
57
31
21
9
36
1.86
32165--32210
2
22.5
2
91
4
74
52
2
0
45
1.13
34115--34145
10
3.0
10
90
9
53
41
9
9
38
1.71
34115--34145
11
2.9
11
95
4
55
41
9
9
38
1.71
36186--36212
7
3.9
7
100
0
54
88
0
11
0
0.50
37353--37493
64
2.2
63
83
3
167
31
16
10
41
1.82
37383--37493
32
3.5
32
93
0
177
30
18
11
39
1.86
39546--39587
2
21.0
2
100
0
84
50
0
0
50
1.00

Tables:   1

The End!