Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022226.1 Corchorus olitorius cultivar O-4 contig22259, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7137
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33


Found at i:6685 original size:33 final size:33

Alignment explanation


    Indices: 6643--6707  Score: 96
    Period size: 33  Copynumber: 2.0  Consensus size: 33

       6633 TTATAATCAG

                                              
       6643 GATCGACATGAGC-AATAACAGACATATTCCTGT
          1 GATCGACATGA-CAAATAACAGACATATTCCTGT

                              *  *          
       6676 GATCGACATGACAAATAATAGTCATATTCCTG
          1 GATCGACATGACAAATAACAGACATATTCCTG

       6708 ATATTAGTCT


Statistics
Matches: 29,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  32    1  0.03
  33   28  0.97

ACGTcount: A:0.37, C:0.20, G:0.17, T:0.26


Consensus pattern (33 bp):   
GATCGACATGACAAATAACAGACATATTCCTGT
Done.