Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022227.1 Corchorus olitorius cultivar O-4 contig22260, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10565
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:14 original size:1 final size:1

Alignment explanation


    Indices: 9--58  Score: 100
    Period size: 1  Copynumber: 50.0  Consensus size: 1

          1 TTTNTTTG

                                                              
          9 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

         59 CCTTGAGGAA


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   49  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Found at i:5748 original size:21 final size:21

Alignment explanation


    Indices: 5710--5749  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       5700 GACGCCTACA

                   *     *       
       5710 TGGTTTGTCTGAAGACCCATG
          1 TGGTTTGCCTGAACACCCATG

                        *      
       5731 TGGTTTGCCTGATCACCCA
          1 TGGTTTGCCTGAACACCCA

       5750 GGTAGGCAGT


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.17, C:0.25, G:0.25, T:0.33


Consensus pattern (21 bp):   
TGGTTTGCCTGAACACCCATG

Found at i:8177 original size:13 final size:13

Alignment explanation


    Indices: 8159--8186  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

       8149 ATTCCTAATG

                         
       8159 TTAGCTGTTAAGA
          1 TTAGCTGTTAAGA

                         
       8172 TTAGCTGTTAAGA
          1 TTAGCTGTTAAGA

              
       8185 TT
          1 TT

       8187 TGATGTAATG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43


Consensus pattern (13 bp):   
TTAGCTGTTAAGA
Done.