Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022235.1 Corchorus olitorius cultivar O-4 contig22268, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44923

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2418--2488
26
2.7
27
80
4
81
18
19
25
36
1.94
2907--2964
28
2.1
28
100
0
116
29
17
6
46
1.74
9121--9186
2
33.5
2
96
3
125
0
51
0
48
1.00
11022--11092
34
2.1
34
89
0
106
28
16
7
47
1.73
12854--12898
23
2.0
23
100
0
90
42
13
4
40
1.64
16794--16823
15
2.0
15
93
0
51
50
0
6
43
1.28
24911--24947
19
1.9
19
88
0
56
32
18
10
37
1.86
27008--27048
14
2.9
14
86
10
57
68
0
0
31
0.90
27010--27047
15
2.7
14
80
11
51
68
0
0
31
0.90
40270--40294
13
1.9
13
100
0
50
40
8
12
40
1.72
42065--42259
22
9.1
21
71
14
100
38
16
9
34
1.81
42050--42120
17
3.7
19
73
17
65
42
8
12
36
1.73
42101--42206
43
2.4
45
80
7
121
39
16
10
33
1.83
42101--42232
65
2.0
66
81
7
153
40
18
8
33
1.80
42330--42371
22
1.9
22
85
0
57
28
23
11
35
1.91
42344--42393
26
1.9
26
91
0
82
28
30
10
32
1.89
42375--42519
22
6.5
22
69
7
96
33
12
13
40
1.81
42443--42549
44
2.4
44
79
3
117
33
14
14
37
1.87
43553--43629
40
1.9
40
97
0
145
48
12
6
32
1.67
43554--43620
22
3.2
22
66
23
63
47
14
4
32
1.65

Tables:   1

The End!