Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022237.1 Corchorus olitorius cultivar O-4 contig22270, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2153
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36


Found at i:1334 original size:60 final size:57

Alignment explanation


    Indices: 1242--1352  Score: 159
    Period size: 59  Copynumber: 1.9  Consensus size: 57

       1232 ATCATGCCTC

                 *                                                    
       1242 GGTCCTAAAACGTCTTTTTTAGGCATCTAATAAAAAAACATGTCACTCGATAAGTCTT
          1 GGTCCGAAAACGTCTTTTTTAGGCATCTAAT-AAAAAACATGTCACTCGATAAGTCTT

                                   *            *           *    
       1300 GGTCCGAAAACGTCCTTTTTTTATGCATCTAATAAAGAACATGTCACTTGATA
          1 GGTCCGAAAACGT-C-TTTTTTAGGCATCTAATAAAAAACATGTCACTCGATA

       1353 TTTGATTAAT


Statistics
Matches: 47,  Mismatches: 4, Indels: 3
        0.87            0.07        0.06

Matches are distributed among these distances:
  58   12  0.26
  59   19  0.40
  60   16  0.34

ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33


Consensus pattern (57 bp):   
GGTCCGAAAACGTCTTTTTTAGGCATCTAATAAAAAACATGTCACTCGATAAGTCTT
Done.