Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022241.1 Corchorus olitorius cultivar O-4 contig22274, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90699

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
654--756
51
2.0
50
81
5
118
20
21
13
44
1.85
4416--4455
21
1.9
21
84
0
53
17
25
25
32
1.97
8967--9006
21
1.9
21
85
10
55
30
17
10
42
1.82
25093--25125
16
2.1
16
100
0
66
42
0
18
39
1.50
26070--26172
30
3.5
30
82
1
127
28
19
32
20
1.97
53752--53784
14
2.5
13
90
9
57
24
6
36
33
1.80
65798--65823
2
13.0
2
100
0
52
50
0
0
50
1.00
73305--73382
20
3.9
20
82
0
93
52
3
30
12
1.57
73303--73381
40
2.0
40
89
0
122
54
2
30
12
1.51
75089--75114
13
2.0
13
100
0
52
30
23
0
46
1.53
78078--78224
75
1.9
76
87
4
217
40
3
14
41
1.63

Tables:   1

The End!