Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022242.1 Corchorus olitorius cultivar O-4 contig22275, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7160
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34


Found at i:814 original size:24 final size:24

Alignment explanation


    Indices: 782--879  Score: 142
    Period size: 24  Copynumber: 4.1  Consensus size: 24

        772 CGGAAAATCT

                          *   *     
        782 GAAAAATCACAGTCATCAGAACCA
          1 GAAAAATCACAGTCGTCAAAACCA

                                 *  
        806 GAAAAATCACAGTCGTCAAAAGCA
          1 GAAAAATCACAGTCGTCAAAACCA

                       * *          
        830 GAAAAATCACAATTGTCAAAACCA
          1 GAAAAATCACAGTCGTCAAAACCA

                      *             
        854 GAAAAATCACGGTCGTCAAAACCA
          1 GAAAAATCACAGTCGTCAAAACCA

              
        878 GA
          1 GA

        880 GTCATCGACA


Statistics
Matches: 65,  Mismatches: 9, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  24   65  1.00

ACGTcount: A:0.50, C:0.22, G:0.14, T:0.13


Consensus pattern (24 bp):   
GAAAAATCACAGTCGTCAAAACCA

Done.