Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022246.1 Corchorus olitorius cultivar O-4 contig22279, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1793
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.38


Found at i:553 original size:10 final size:10

Alignment explanation


    Indices: 538--567  Score: 60
    Period size: 10  Copynumber: 3.0  Consensus size: 10

        528 CCGTTGAGGA

                      
        538 ACTGTTTTAT
          1 ACTGTTTTAT

                      
        548 ACTGTTTTAT
          1 ACTGTTTTAT

                      
        558 ACTGTTTTAT
          1 ACTGTTTTAT

        568 TTATATGATT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   20  1.00

ACGTcount: A:0.20, C:0.10, G:0.10, T:0.60


Consensus pattern (10 bp):   
ACTGTTTTAT
Done.