Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022248.1 Corchorus olitorius cultivar O-4 contig22281, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43842

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6882--6953
23
3.2
23
67
25
55
30
1
9
58
1.39
7080--7120
20
2.0
21
85
4
57
58
0
4
36
1.20
9822--9904
31
2.6
31
75
5
78
60
9
3
26
1.45
13299--13336
2
19.0
2
100
0
76
50
0
0
50
1.00
15247--15331
22
3.7
25
69
23
78
38
2
1
57
1.19
22651--22683
2
16.5
2
100
0
66
51
0
0
48
1.00
23523--23561
19
2.1
19
100
0
78
15
15
10
58
1.62
23589--23642
17
3.2
17
97
0
99
16
12
7
62
1.51
23595--23669
17
4.1
20
86
8
65
18
16
10
54
1.70
24031--24088
29
2.0
29
93
0
98
41
17
5
36
1.72
24298--24660
187
2.0
175
90
7
566
41
9
28
20
1.84
30256--30284
14
2.1
14
100
0
58
34
31
13
20
1.92
30738--30860
65
1.9
65
86
0
174
47
10
23
18
1.80
30998--31048
25
2.0
25
96
0
93
43
7
25
23
1.81
30891--31201
64
4.9
64
79
10
327
50
11
21
16
1.77
30915--31145
128
1.8
128
93
0
399
51
10
21
16
1.74
31911--32025
56
2.1
56
100
0
230
29
5
19
46
1.71
36395--36430
1
36.0
1
94
0
63
97
2
0
0
0.18
36423--36458
4
8.8
4
90
3
54
75
22
2
0
0.94
37824--37861
15
2.7
15
84
8
53
44
23
23
7
1.79
40404--40451
12
3.8
12
76
15
51
25
14
10
50
1.74

Tables:   1

The End!