Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022252.1 Corchorus olitorius cultivar O-4 contig22285, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4927

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1434--1973
22
24.8
22
70
12
187
35
15
9
39
1.80
1713--1818
45
2.4
45
85
1
133
36
18
10
33
1.85
2056--2132
22
3.5
22
80
8
77
33
12
10
42
1.77
2124--2149
12
2.2
12
100
0
52
26
11
15
46
1.80
2155--2236
22
3.8
21
76
9
76
35
9
10
43
1.73
2355--2504
22
6.9
21
76
8
104
39
19
8
33
1.81
2343--2740
44
9.2
44
70
13
231
37
17
8
36
1.81
2347--2743
66
5.8
66
75
11
300
38
18
8
35
1.81
2496--2540
23
2.0
22
82
4
54
33
13
8
44
1.75
2527--2743
22
9.8
22
71
13
140
38
17
9
35
1.82
2435--2582
78
1.9
78
80
5
174
37
17
7
37
1.78
4745--4779
3
11.7
3
100
0
70
34
0
0
65
0.93

Tables:   1

The End!