Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022255.1 Corchorus olitorius cultivar O-4 contig22288, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11716
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33


Found at i:2014 original size:3 final size:3

Alignment explanation


    Indices: 2006--2030  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

       1996 AAGCTCAATT

                                             
       2006 ACC ACC ACC ACC ACC ACC ACC ACC A
          1 ACC ACC ACC ACC ACC ACC ACC ACC A

       2031 AGGGGAGGCG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.36, C:0.64, G:0.00, T:0.00


Consensus pattern (3 bp):   
ACC

Found at i:8922 original size:12 final size:11

Alignment explanation


    Indices: 8905--8934  Score: 51
    Period size: 12  Copynumber: 2.6  Consensus size: 11

       8895 ACTTAAACGA

                       
       8905 AAAATAAAAAT
          1 AAAATAAAAAT

                        
       8916 GAAAATAAAAAT
          1 -AAAATAAAAAT

                   
       8928 AAAATAA
          1 AAAATAA

       8935 CGAAAAAGTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  11    7  0.39
  12   11  0.61

ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17


Consensus pattern (11 bp):   
AAAATAAAAAT
Done.