Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022256.1 Corchorus olitorius cultivar O-4 contig22289, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2848
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:1303 original size:15 final size:14

Alignment explanation


    Indices: 1279--1310  Score: 55
    Period size: 15  Copynumber: 2.2  Consensus size: 14

       1269 GGAATAAAAA

                          
       1279 TTAAATATTTTATT
          1 TTAAATATTTTATT

                           
       1293 TTAACATATTTTATT
          1 TTAA-ATATTTTATT

               
       1308 TTA
          1 TTA

       1311 TTGAAATTTA


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    4  0.24
  15   13  0.76

ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62


Consensus pattern (14 bp):   
TTAAATATTTTATT
Done.