Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022257.1 Corchorus olitorius cultivar O-4 contig22290, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7539
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35


Found at i:1820 original size:4 final size:4

Alignment explanation


    Indices: 1811--1835  Score: 50
    Period size: 4  Copynumber: 6.2  Consensus size: 4

       1801 AATGAAAGGG

                                           
       1811 GAAA GAAA GAAA GAAA GAAA GAAA G
          1 GAAA GAAA GAAA GAAA GAAA GAAA G

       1836 GTTTGTTATA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   21  1.00

ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00


Consensus pattern (4 bp):   
GAAA

Found at i:6896 original size:23 final size:24

Alignment explanation


    Indices: 6857--6906  Score: 84
    Period size: 23  Copynumber: 2.1  Consensus size: 24

       6847 TCTTAAGACA

                                     
       6857 ACAAAGCAGAGAGAGAGAAGGTGAT
          1 ACAAAGCA-AGAGAGAGAAGGTGAT

                                    
       6882 ACAAAGC-AGAGAGAGAAGGTGAT
          1 ACAAAGCAAGAGAGAGAAGGTGAT

              
       6905 AC
          1 AC

       6907 GAATCTAGTT


Statistics
Matches: 25,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  23   18  0.72
  25    7  0.28

ACGTcount: A:0.48, C:0.10, G:0.34, T:0.08


Consensus pattern (24 bp):   
ACAAAGCAAGAGAGAGAAGGTGAT
Done.