Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022258.1 Corchorus olitorius cultivar O-4 contig22291, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3067
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.29


Found at i:64 original size:33 final size:33

Alignment explanation


    Indices: 12--116  Score: 122
    Period size: 33  Copynumber: 3.2  Consensus size: 33

          2 ATTAGCATCC

                           *                  
         12 AAAACAGAATTT-GTTTCATCACAAACAACACCT
          1 AAAACAG-ATTTAGTATCATCACAAACAACACCT

                          *                * 
         45 AAAACAGATTTAGTGTCATCACAAACAACACTT
          1 AAAACAGATTTAGTATCATCACAAACAACACCT

               **  *              *       *  
         78 AAATTAGGTTTAGTATCATCACTAACAACATCT
          1 AAAACAGATTTAGTATCATCACAAACAACACCT

                  
        111 AAAACA
          1 AAAACA

        117 CTCTTTGCAA


Statistics
Matches: 60,  Mismatches: 11, Indels: 2
        0.82            0.15        0.03

Matches are distributed among these distances:
  32    4  0.07
  33   56  0.93

ACGTcount: A:0.46, C:0.21, G:0.08, T:0.26


Consensus pattern (33 bp):   
AAAACAGATTTAGTATCATCACAAACAACACCT
Done.