Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022267.1 Corchorus olitorius cultivar O-4 contig22300, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3362
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32


Found at i:2186 original size:11 final size:10

Alignment explanation


    Indices: 2169--2194  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

       2159 TCTGGTCGAA

                      
       2169 ATTTTTTTTT
          1 ATTTTTTTTT

                      
       2179 ATTTTTTTTT
          1 ATTTTTTTTT

                  
       2189 ATTTTT
          1 ATTTTT

       2195 GAAATATTTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88


Consensus pattern (10 bp):   
ATTTTTTTTT
Done.