Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022268.1 Corchorus olitorius cultivar O-4 contig22301, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4992
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30


Found at i:4875 original size:21 final size:21

Alignment explanation


    Indices: 4825--4869  Score: 63
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       4815 GTGACACCGC

                *                
       4825 CCACCTGGGTCCTCAAGCAAA
          1 CCACATGGGTCCTCAAGCAAA

                      *      *   
       4846 CCACATGGGTGCTCAAGGAAA
          1 CCACATGGGTCCTCAAGCAAA

               
       4867 CCA
          1 CCA

       4870 TGTGGGCGCC


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.31, C:0.33, G:0.22, T:0.13


Consensus pattern (21 bp):   
CCACATGGGTCCTCAAGCAAA
Done.