Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022269.1 Corchorus olitorius cultivar O-4 contig22302, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8206
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32


Found at i:5937 original size:31 final size:31

Alignment explanation


    Indices: 5892--5950  Score: 91
    Period size: 31  Copynumber: 1.9  Consensus size: 31

       5882 TGTCCCTCTG

                   *              *        
       5892 AAAAAAATGAGAGTTAGTAACCTCAAAAGAA
          1 AAAAAAAAGAGAGTTAGTAACCCCAAAAGAA

                     *                  
       5923 AAAAAAAAGGGAGTTAGTAACCCCAAAA
          1 AAAAAAAAGAGAGTTAGTAACCCCAAAA

       5951 TCATGAACAC


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  31   25  1.00

ACGTcount: A:0.58, C:0.12, G:0.17, T:0.14


Consensus pattern (31 bp):   
AAAAAAAAGAGAGTTAGTAACCCCAAAAGAA
Done.