Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022274.1 Corchorus olitorius cultivar O-4 contig22307, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7750
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:6541 original size:21 final size:21

Alignment explanation


    Indices: 6512--6566  Score: 65
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       6502 GGCTTGGAAT

                *            **  
       6512 GGTGATGGCATGGGCATGGCC
          1 GGTGGTGGCATGGGCATAACC

                      *    *     
       6533 GGTGGTGGCACGGGCTTAACC
          1 GGTGGTGGCATGGGCATAACC

                         
       6554 GGTGGTGGCATGG
          1 GGTGGTGGCATGG

       6567 CACTGGTCAG


Statistics
Matches: 28,  Mismatches: 6, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  21   28  1.00

ACGTcount: A:0.13, C:0.18, G:0.49, T:0.20


Consensus pattern (21 bp):   
GGTGGTGGCATGGGCATAACC
Done.