Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022275.1 Corchorus olitorius cultivar O-4 contig22308, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5344
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32


Found at i:321 original size:28 final size:28

Alignment explanation


    Indices: 269--323  Score: 74
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        259 GTATTCATGA

                 *          *   *       
        269 TTTTGGGGTTACTAACTCCCTTTTTTTC
          1 TTTTGAGGTTACTAACACCCATTTTTTC

                              *        
        297 TTTTGAGGTTACTAACACTCATTTTTT
          1 TTTTGAGGTTACTAACACCCATTTTTT

        324 TTTCAGAGGG


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  28   23  1.00

ACGTcount: A:0.16, C:0.18, G:0.13, T:0.53


Consensus pattern (28 bp):   
TTTTGAGGTTACTAACACCCATTTTTTC

Found at i:332 original size:28 final size:28

Alignment explanation


    Indices: 275--332  Score: 64
    Period size: 28  Copynumber: 2.1  Consensus size: 28

        265 ATGATTTTGG

                      *  *          **  
        275 GGTTACTAACTCCCTTTTTTTCTTTTGA
          1 GGTTACTAACACCATTTTTTTCTTCAGA

                                         
        303 GGTTACTAACACTCATTTTTTT-TTCAGA
          1 GGTTACTAACAC-CATTTTTTTCTTCAGA

              
        331 GG
          1 GG

        333 GACAATACTT


Statistics
Matches: 25,  Mismatches: 4, Indels: 2
        0.81            0.13        0.06

Matches are distributed among these distances:
  28   17  0.68
  29    8  0.32

ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48


Consensus pattern (28 bp):   
GGTTACTAACACCATTTTTTTCTTCAGA
Done.