Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022276.1 Corchorus olitorius cultivar O-4 contig22309, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4292
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.29


Found at i:2242 original size:25 final size:25

Alignment explanation


    Indices: 2213--2260  Score: 87
    Period size: 25  Copynumber: 1.9  Consensus size: 25

       2203 GTATTTTGCG

                                     
       2213 TTCATGTAGCTCAAAGCTAATTTCA
          1 TTCATGTAGCTCAAAGCTAATTTCA

                           *       
       2238 TTCATGTAGCTCAAATCTAATTT
          1 TTCATGTAGCTCAAAGCTAATTT

       2261 AACATTGCAT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   22  1.00

ACGTcount: A:0.31, C:0.19, G:0.10, T:0.40


Consensus pattern (25 bp):   
TTCATGTAGCTCAAAGCTAATTTCA
Done.