Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022278.1 Corchorus olitorius cultivar O-4 contig22311, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4448
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30


Found at i:1530 original size:11 final size:11

Alignment explanation


    Indices: 1514--1539  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

       1504 CTAGCCCTAA

                       
       1514 AAAACTAGAAG
          1 AAAACTAGAAG

                       
       1525 AAAACTAGAAG
          1 AAAACTAGAAG

                
       1536 AAAA
          1 AAAA

       1540 GAAATTATCT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.69, C:0.08, G:0.15, T:0.08


Consensus pattern (11 bp):   
AAAACTAGAAG

Found at i:2160 original size:19 final size:18

Alignment explanation


    Indices: 2127--2162  Score: 54
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       2117 TTGAAATAGA

                              
       2127 TCTTCAAAAATCTTCAAG
          1 TCTTCAAAAATCTTCAAG

                     *        
       2145 TCTTCAAATTATCTTCAA
          1 TCTTCAAA-AATCTTCAA

       2163 ATGGTCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    8  0.50
  19    8  0.50

ACGTcount: A:0.36, C:0.22, G:0.03, T:0.39


Consensus pattern (18 bp):   
TCTTCAAAAATCTTCAAG
Done.