Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022279.1 Corchorus olitorius cultivar O-4 contig22312, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5643
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:1297 original size:17 final size:17

Alignment explanation


    Indices: 1275--1313  Score: 69
    Period size: 17  Copynumber: 2.3  Consensus size: 17

       1265 GACAATGTCT

                       *     
       1275 TATTTGCTTATGTATTA
          1 TATTTGCTTATATATTA

                             
       1292 TATTTGCTTATATATTA
          1 TATTTGCTTATATATTA

                 
       1309 TATTT
          1 TATTT

       1314 CGCCCAATTT


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  17   21  1.00

ACGTcount: A:0.26, C:0.05, G:0.08, T:0.62


Consensus pattern (17 bp):   
TATTTGCTTATATATTA

Found at i:5218 original size:16 final size:15

Alignment explanation


    Indices: 5180--5221  Score: 66
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       5170 ACAGAGATTG

                   *       
       5180 ACAGAAAGCAATTAA
          1 ACAGAAAACAATTAA

                           
       5195 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                        
       5210 ACTAGAAAACAA
          1 AC-AGAAAACAA

       5222 AGCAGAGTAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   16  0.64
  16    9  0.36

ACGTcount: A:0.64, C:0.14, G:0.10, T:0.12


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.