Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022281.1 Corchorus olitorius cultivar O-4 contig22314, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1973
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32


Found at i:1943 original size:14 final size:15

Alignment explanation


    Indices: 1924--1953  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1914 CAATCAAAGC

                           
       1924 AATAAT-CAAGGAAA
          1 AATAATGCAAGGAAA

                           
       1938 AATAATGCAAGGAAA
          1 AATAATGCAAGGAAA

             
       1953 A
          1 A

       1954 TTAAAGAGAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    6  0.40
  15    9  0.60

ACGTcount: A:0.63, C:0.07, G:0.17, T:0.13


Consensus pattern (15 bp):   
AATAATGCAAGGAAA

Done.