Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002229.1 Corchorus olitorius cultivar O-4 contig02229, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 624

Length: 1041
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.34


Found at i:962 original size:28 final size:28

Alignment explanation


    Indices: 874--962  Score: 92
    Period size: 28  Copynumber: 3.1  Consensus size: 28

        864 ACTTCTAGTG

                   *         *           
        874 TTTGGACGTTTT-CTCCATAAACT-TCAA
          1 TTTGGACATTTTAC-CCTTAAACTCTCAA

                 *        *     *         
        901 TTTTGTACATTTTATCCTCTGAACTCTCAA
          1 -TTTGGACATTTTACCCT-TAAACTCTCAA

                                        
        931 TTTGGACATTTTACCCTTAAACTCTCAA
          1 TTTGGACATTTTACCCTTAAACTCTCAA

                
        959 TTTG
          1 TTTG

        963 AGCCTTTATT


Statistics
Matches: 50,  Mismatches: 8, Indels: 6
        0.78            0.12        0.09

Matches are distributed among these distances:
  28   26  0.52
  29   20  0.40
  30    4  0.08

ACGTcount: A:0.25, C:0.22, G:0.09, T:0.44


Consensus pattern (28 bp):   
TTTGGACATTTTACCCTTAAACTCTCAA
Done.