Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022292.1 Corchorus olitorius cultivar O-4 contig22325, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43738

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10--48
2
19.5
2
94
0
69
48
2
0
48
1.15
15012--15043
10
3.4
10
83
16
50
0
9
0
90
0.45
17018--17074
25
2.4
24
85
5
71
57
3
7
31
1.42
18250--18316
31
2.2
31
81
5
84
47
11
16
23
1.80
18435--18515
31
2.6
31
92
0
126
35
12
11
40
1.78
19554--19696
31
4.6
31
79
8
139
38
13
16
32
1.87
19554--19696
61
2.3
63
81
4
157
38
13
16
32
1.87
19826--19892
31
2.2
31
89
5
102
22
19
10
47
1.79
27718--27779
31
2.1
29
88
11
90
48
0
29
22
1.51
29022--29046
2
12.5
2
100
0
50
52
0
0
48
1.00
31477--31526
21
2.4
21
96
0
91
28
16
28
28
1.97
33122--33161
21
1.9
21
94
0
71
30
22
20
27
1.98
34675--34743
23
2.8
25
71
22
74
42
10
26
21
1.84
35356--35426
37
1.9
36
82
2
88
30
30
18
19
1.96
36924--36965
21
2.0
21
95
0
75
28
26
19
26
1.98
40488--40567
5
15.4
5
79
14
74
38
2
3
55
1.32
40973--41055
22
3.8
22
78
7
80
38
7
12
42
1.70
41038--41161
22
5.6
22
72
3
79
37
12
12
37
1.80
41037--41142
44
2.4
43
82
6
124
37
13
10
38
1.79
41105--41214
22
4.9
22
77
8
105
44
11
15
28
1.82

Tables:   1

The End!