Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01022298.1 Corchorus olitorius cultivar O-4 contig22331, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8660
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31


Found at i:7222 original size:19 final size:19

Alignment explanation


    Indices: 7182--7222  Score: 55
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       7172 AGATCATAGT

                          *  * 
       7182 AAAACCAAGATAATCAATC
          1 AAAACCAAGATAATAAACC

                  *            
       7201 AAAACCGAGATAATAAACC
          1 AAAACCAAGATAATAAACC

               
       7220 AAA
          1 AAA

       7223 TCAATCAAAT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.61, C:0.20, G:0.07, T:0.12


Consensus pattern (19 bp):   
AAAACCAAGATAATAAACC
Done.