Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002230.1 Corchorus olitorius cultivar O-4 contig02230, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 696

Length: 1160
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:234 original size:19 final size:19

Alignment explanation


    Indices: 206--243  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

        196 CTACAATGTA

                 *             
        206 TCAAATAAGAACAGATACT
          1 TCAAACAAGAACAGATACT

                               
        225 TCAAACAAGAACAGATACT
          1 TCAAACAAGAACAGATACT

        244 AAAGAGTTAG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.53, C:0.18, G:0.11, T:0.18


Consensus pattern (19 bp):   
TCAAACAAGAACAGATACT
Done.