Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022308.1 Corchorus olitorius cultivar O-4 contig22341, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21805

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1656--1688
12
2.6
13
95
4
59
36
0
0
63
0.95
4224--4250
6
4.5
6
100
0
54
37
0
0
62
0.95
7788--7859
36
2.0
36
97
0
135
23
13
31
30
1.94
8807--9093
41
6.8
43
76
10
227
40
26
10
22
1.86
8805--9093
84
3.4
81
84
9
341
40
26
10
23
1.86
10927--10977
25
2.0
25
100
0
102
43
0
19
37
1.51
18794--18835
15
2.7
15
92
3
66
64
14
9
11
1.50
20197--20237
19
2.2
19
91
4
66
31
19
7
41
1.79
20200--20247
11
4.7
11
75
17
50
27
20
10
41
1.85
20628--20652
2
12.5
2
100
0
50
52
0
0
48
1.00
21305--21408
16
6.6
16
79
9
97
9
16
39
34
1.81
21318--21400
32
2.6
32
90
0
130
8
16
38
36
1.79

Tables:   1

The End!